The nature of inter- and intramolecular interactions in F2OXe…HX (X= F, Cl, Br, I) complexes

Journal article


Makarewicz, E., Lundell, J., Gordon, A.J. and Berski, S. 2016. The nature of inter- and intramolecular interactions in F2OXe…HX (X= F, Cl, Br, I) complexes. Journal of Molecular Modeling. 22 (119). https://doi.org/10.1007/s00894-016-2970-8
AuthorsMakarewicz, E., Lundell, J., Gordon, A.J. and Berski, S.
Abstract

Electronic structure of the XeOF2 molecule and its two complexes with HX (X= F, Cl, Br, I) molecules have been studied in the gas phase using quantum chemical topology methods: topological analysis of electron localization function (ELF), electron density, ρ(r), reduced gradient of electron density |RDG(r)| in real space, and symmetry adapted perturbation theory (SAPT) in the Hilbert space. The wave function has been approximated by the MP2 and DFT methods, using APF-D, B3LYP, M062X, and B2PLYP functionals, with the dispersion correction as proposed by Grimme (GD3). For the Xe-F and Xe=O bonds in the isolated XeOF2 molecule, the bonding ELF-localization basins have not been observed. According to the ELF results, these interactions are not of covalent nature with shared electron density. There are two stable F2OXe…HF complexes. The first one is stabilized by the F-H…F and Xe…F interactions (type I) and the second by the F-H…O hydrogen bond (type II). The SAPT analysis confirms the electrostatic term, Eelst (1) and the induction energy, Eind (2) to be the major contributors to stabilizing both types of complexes.

KeywordsELF; Quantum chemical topology; SAPT; Noble gas complexes; Xenon
Year2016
JournalJournal of Molecular Modeling
Journal citation22 (119)
PublisherSpringer
ISSN1610-2940
0948-5023
Digital Object Identifier (DOI)https://doi.org/10.1007/s00894-016-2970-8
Official URLhttps://link.springer.com/article/10.1007/s00894-016-2970-8#Sec1
Publication dates
Online04 May 2016
Publication process dates
Accepted24 Mar 2016
Deposited22 Feb 2024
Publisher's version
License
File Access Level
Open
Output statusPublished
References

1. Ogden JS, Turner J (1966) The hydrolysis of xenon tetrafluoride at
−80°. J Chem Commun 19:693–694
2. Jacob E, Opferkuch R (1976) Xenonoxiddifluorid, XeOF2. Angew
Chem Int Ed Engl 15:158–159
3. Brock DS, Bilir V, Mercier HPA, Schrobilgen GJ (2007) XeOF2,
F2OXeNCCH3, and XeOF2•nHF; rare examples of Xe(IV) oxide
fluorides. J Am Chem Soc 129:3598–3611
4. Bader RFW (1990) Atoms in molecules—a quantum theory.
Oxford Univ Press, Oxford
5. Bohórquez HJ, Boyd RJ (2010) A localized electrons detector for atomic and molecular systems. Theor Chem Accounts
127:393–400
6. Bohórquez HJ, Matta CF, Boyd RJ (2010) The localized electrons
detector as an ab initio representation of molecular structures. Int J
Quantum Chem 110:2418–2425
7. Johnson ER, Keinan S, Mori-Sánchez P, Contreras-García J, Cohen
AJ, Yang W (2010) Revealing noncovalent interactions. J Am
Chem Soc 132:6498–6506
8. Becke AD, Edgecombe KE (1990) A simple measure of electron
localization in atomic and molecular systems. J Chem Phys 92:
5397–5403
9. Silvi B, Savin A (1994) Classification of chemical bonds based on
topological analysis of electron localization functions. Nature 371:
683–686 (London, UK)
10. Jeziorski B, Moszynski R, Szalewicz K (1994) Perturbation theory
approach to intermolecular potential energy surfaces of van der
Waals complexes. Chem Rev 94:1887–1930 (Washington,
DC, US)
11. Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA et al
(2009) Gaussian 09, Revision D01. Gaussian, Inc, Wallingford
12. Møller C, Plesset MS (1934) Note on an approximation treatment
for many-electron systems. Phys Rev 46:618–622
13. Head-Gordon M, Pople JA, Frisch MJ (1998) MP2 energy evaluation by direct methods. Chem Phys Lett 153:503–506
14. Austin A, Petersson G, Frisch MJ, Dobek FJ, Scalmani G, Throssell
K (2012) A density functional with spherical atom dispersion terms.
J Chem Theory Comput 8:4989–5007
15. Becke AD (1993) Density-functional thermochemistry III the role
of exact exchange. J Chem Phys 98:5648–5652
16. Zhao Y, Truhlar DG (2008) The M06 suite of density functionals
for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements:
two new functionals and systematic testing of four M06-
class functionals and 12 other functionals. Theor Chem
Accounts 120:215–241
17. Schwabe T, Grimme S (2007) Double-hybrid density functionals
with long-range dispersion corrections: higher accuracy and extended applicability. Phys Chem Chem Phys 9:3397–3406
18. Grimme S, Antony J, Ehrlich S, Krieg H (2010) A consistent and
accurate ab initio parameterization of density functional dispersion
119 Page 10 of 11 J Mol Model (2016) 22: 119
correction (DFT-D) for the 94 elements H-Pu. J Chem Phys 132:
154104–154119
19. Werner H-J, Knowles PJ, Knizia G, Manby FR, Schütz M et al.
MOLPRO, version 20121, a package of ab initio programs, see
http://wwwmolpro.net
20. Grimme S (2006) Semiempirical hybrid density functional with
perturbative second-order correlation. J Chem Phys 124:034108–
034116
21. Perdew JP, Schmidt K (2001) Jacob’s ladder of density functional
approximations for the exchange-correlation energy. AIP Conf Proc
577:1
22. Rappoport D, Furche F (2010) Property-optimized Gaussian basis
sets for molecular response calculations. J Chem Phys 133:134105–
134111
23. Boys SF, Bernardi F (1970) The calculation of small molecular
interactions by the differences of separate total energies. Some procedures with reduced errors. Mol Phys 19:553–566
24. Keith TA (2012) AIMAll, version 121109. TK Gristmill Software,
Overland Park, aim.tkgristmill.com
25. Noury S, Krokidis X, Fuster F, Silvi B (2009) B Topmod09
26. Barbieri PL, Fantin PA, Jorge FE (2006) Gaussian basis sets of
triple and quadruple zeta valence quality for correlated wave functions. Mol Phys 104:2945–2954
27. Machado SF, Camiletti CG, Canal Neto A, Jorge FE, Jorge RS
(2009) Gaussian basis set of triple zeta valence quality for the atoms
from K to Kr: Application in DFT and CCSD(T) calculations of
molecular properties. Mol Phys 107:1713–1727
28. Campos CT, Jorge FE (2013) Triple zeta quality basis sets for atoms
Rb through Xe: application in CCSD(T) atomic and molecular
property calculations. Mol Phys 111:167–173
29. Feller D (1996) The role of databases in support of computational
chemistry calculations. J Comput Chem 17:1571–1586
30. Schuchardt KL, Didier BT, Elsethagen T, Sun L, Gurumoorthi V,
Chase J, Li J, Windus (2007) Basis set exchange: a community
database for computational sciences. J Chem Inf Model 47:1045–
1052
31. Raub S, Jansen G (2001) A quantitative measure of bond polarity
from the electron localization function and the theory of atoms in
molecules. Theor Chem Accounts 106:223–232
32. Braïda B, Hiberty PC (2013) The essential role of chargeshift bonding in hypervalent prototype XeF2. Nat Chem 5:
417–422
33. Contreras-Garcia J, Johnson ER, Keinan S, Chaudret R,
Piquemal J-P, Beratan DN, Yang W (2011) NCIPLOT: a
program for plotting non-covalent interaction regions. J
Chem Theory Comput 7:625–632

Permalink -

https://repository.canterbury.ac.uk/item/97279/the-nature-of-inter-and-intramolecular-interactions-in-f2oxe-hx-x-f-cl-br-i-complexes

Download files


Publisher's version
s00894-016-2970-8.pdf
License: CC BY 4.0
File access level: Open

  • 34
    total views
  • 8
    total downloads
  • 1
    views this month
  • 1
    downloads this month

Export as

Related outputs

How can we educate future generations to effectively respond to global challenges and live sustainably?
Gordon, A.J. and Simpson, S. 2024. How can we educate future generations to effectively respond to global challenges and live sustainably? in: Billingsley, B., Chappell, K. and Simpson, S. (ed.) The Future of Knowledge: The Role of Epistemic Insight in Interdisciplinary Learning London Bloomsbury. pp. 117-136
Importance of entrepreneurship for students and academics.
Gordon, A.J. 2024. Importance of entrepreneurship for students and academics.
The challenges of leading and managing Polish Saturday schools in the United Kingdom.
Gordon, A. J. and Kozinska, M.A. 2024. The challenges of leading and managing Polish Saturday schools in the United Kingdom.
Building collaborations for a better future: Empowering diverse communities in Kent through collaboration, innovation and research
Gordon, A. J. and Stancu, R. F. 2024. Building collaborations for a better future: Empowering diverse communities in Kent through collaboration, innovation and research.
Creative strategies for implementing digital tools
Gordon, A.J. and Keane, K. 2024. Creative strategies for implementing digital tools .
Harnessing the power of AI in business
Gordon, A. J. and Keane, K. 2024. Harnessing the power of AI in business.
A self-study of teaching teachers using Epistemic Insight
Warhurst, A., Gordon, A.J. and Campbell, R. 2024. A self-study of teaching teachers using Epistemic Insight.
Exploring leadership and entrepreneurship in Polish supplementary schools in England: A pilot study
Gordon, A. J. and Kozinska, M.A. 2024. Exploring leadership and entrepreneurship in Polish supplementary schools in England: A pilot study.
Female entrepreneurship: Challenges and opportunities
Gordon, A.J. 2024. Female entrepreneurship: Challenges and opportunities.
EI STFC Power of Light animation - introducing Big Questions and Diamond Light Source
Cullimore, M., Billingsley, B., Heyes, J. and Gordon, A. EI STFC Power of Light animation - introducing Big Questions and Diamond Light Source. https://doi.org/10.5281/zenodo.7439214
Topological analysis of Electron Localization Function (ELF) as a tool for understanding electronic structure
Berski, S. and Gordon, A. J. 2023. Topological analysis of Electron Localization Function (ELF) as a tool for understanding electronic structure. in: Reference Module in Chemistry, Molecular Sciences and Chemical Engineering Elsevier.
Collaborating to improve teaching and learning about sustainability within an international learning community
Gordon, A., Simpson, S., Lawson, F. and Thomas, C. 2023. Collaborating to improve teaching and learning about sustainability within an international learning community.
Embedding epistemic insight (EI) in teacher training programmes in English universities: barriers and how to overcome them
Billingsley, B., Riga, F., Windsor, Mark and Gordon, A. 2023. Embedding epistemic insight (EI) in teacher training programmes in English universities: barriers and how to overcome them. Teacher Development. https://doi.org/10.1080/13664530.2023.2236056
Co-creation of learning resources that cross disciplinary boundaries within an international learning community
Gordon, A., Thomas, C., Simpson, S. and Lawson, F. 2023. Co-creation of learning resources that cross disciplinary boundaries within an international learning community.
Power of Light – collaborative co-creation of innovative resources for primary science education.
Gordon, A. and Cullimore, M. 2023. Power of Light – collaborative co-creation of innovative resources for primary science education.
Teaching sustainability and stewardship workshop 1: Collaborative approach to developing engagement with science and religion: Exploring sustainability in an international learning community
Gordon, A., Lawson, F., Simpson, S. and Thomas, C. 2023. Teaching sustainability and stewardship workshop 1: Collaborative approach to developing engagement with science and religion: Exploring sustainability in an international learning community.
Leading learning and teaching transformation across the ITE EI consortium –impact across the partner institutions
Gordon, A. 2023. Leading learning and teaching transformation across the ITE EI consortium –impact across the partner institutions.
Do multiple bonds to the boron atom exist?
Berski, S., Mierzwa, G. and Gordon, A. 2023. Do multiple bonds to the boron atom exist?
The Power of Light Zine 3 - Why do we explore the world around us? - an epistemically insightful way to explore the nature of science and research at Diamond Light Source, UK
Cullimore, M., Halford, K., Day, S,, Gordon, A., Billingsley, B. and Mosselmans, F. 2022. The Power of Light Zine 3 - Why do we explore the world around us? - an epistemically insightful way to explore the nature of science and research at Diamond Light Source, UK. https://doi.org/10.5281/zenodo.7438811
The Power of Light Zine 2 - Why does life exist? - an epistemically insightful way to explore the nature of science and research at Diamond Light Source, UK
Cullimore, M., Geraki, T., Linton, P., Gordon, A., Billingsley, B. and Halford, K. 2022. The Power of Light Zine 2 - Why does life exist? - an epistemically insightful way to explore the nature of science and research at Diamond Light Source, UK. https://doi.org/10.5281/zenodo.7438698
The Power of Light Zine 1 - Why do things change? - an epistemically insightful way to explore the nature of science and research at Diamond Light Source, UK
Cullimore, M., Halford, K., Mosselmans, F., Reeve, L., Billingsley, B. and Gordon, A. 2022. The Power of Light Zine 1 - Why do things change? - an epistemically insightful way to explore the nature of science and research at Diamond Light Source, UK. https://doi.org/10.5281/zenodo.7401129
CPD 1 - Embedding Epistemic Insight and Big Questions across a whole school curriculum
Simpson, S. and Gordon, A. 2022. CPD 1 - Embedding Epistemic Insight and Big Questions across a whole school curriculum. https://doi.org/10.5281/zenodo.7729394
Creating epistemically insightful learning experiences in primary classrooms: insights into the nature of science
Gordon, A., Simpson, S. and Lawson, F. 2022. Creating epistemically insightful learning experiences in primary classrooms: insights into the nature of science.
Transforming teacher education - introducing ITE students to Epistemic Insight: a workshop
Warhurst, A., Campbell, R. and Gordon, A.J. 2022. Transforming teacher education - introducing ITE students to Epistemic Insight: a workshop.
Bristlebots and other friends. A progression of Epistemic insight workshops using small things to ask big questions
Bentley, K., Gordon, A.J. and Litchfield, A. 2022. Bristlebots and other friends. A progression of Epistemic insight workshops using small things to ask big questions.
Science, religion and sustainability in schools: outlining a teacher learning community approach.
Gordon, A.J., Lawson, F., Simpson, S. and Thomas, C. 2022. Science, religion and sustainability in schools: outlining a teacher learning community approach.
The epistemic insight digest: Issue : Autumn 2022
Gordon, A., Shalet, D., Simpson, S., Hassanin, H., Lawson, F., Lawson, M., Litchfield, A., Thomas, C., Canetta, E., Manley, K. and Choong, C. Shalet, D. (ed.) 2022. The epistemic insight digest: Issue : Autumn 2022. Canterbury Canterbury Christ Church University.
Leading transformation in ITE teaching within the EI consortium
Gordon, A.J. 2022. Leading transformation in ITE teaching within the EI consortium.
The epistemic insight digest: Issue 4: Spring 2022
Gordon, A., Cullimore, M., Hackett, L., Shalet, D., Jennings, B-L, Semaan, A. S. and Pickett, M. Shalet, D. (ed.) 2022. The epistemic insight digest: Issue 4: Spring 2022. Canterbury Canterbury Christ Church University.
Interdisciplinary engineering education - essential for the 21st century
Gordon, A., Simpson, S. and Hassanin, H. 2022. Interdisciplinary engineering education - essential for the 21st century.
Theoretical insights and quantitative prediction of the nature of boron–chalcogen (O, S, Se, Te) interactions using the electron density and the electron localisation function (ELF)
Michalski, M., Gordon, A. and Berski, S. 2021. Theoretical insights and quantitative prediction of the nature of boron–chalcogen (O, S, Se, Te) interactions using the electron density and the electron localisation function (ELF). Polyhedron. https://doi.org/10.1016/j.poly.2021.115495
In the search for ditriel B⋯Al non-covalent bonding
Berski, S. and Gordon, A. 2021. In the search for ditriel B⋯Al non-covalent bonding. New Journal of Chemistry . 45, pp. 16740-16749. https://doi.org/10.1039/D1NJ01963E
The nature of the triple Btriple bondB, double, Bdouble bondB, single, B–B, and one-electron, B.B boron-boron bonds from the topological analysis of electron localisation function (ELF) perspective
Mierzwa, G., Gordon, A.J. and Berski, S. 2020. The nature of the triple Btriple bondB, double, Bdouble bondB, single, B–B, and one-electron, B.B boron-boron bonds from the topological analysis of electron localisation function (ELF) perspective. Journal of Molecular Structure. 1221, p. 128530. https://doi.org/10.1016/j.molstruc.2020.128530
The nature of multiple boron-nitrogen bonds studied using electron localization function (ELF), electron density (AIM), and natural bond orbital (NBO) methods
Mierzwa, G., Gordon, A.J. and Berski, S. 2020. The nature of multiple boron-nitrogen bonds studied using electron localization function (ELF), electron density (AIM), and natural bond orbital (NBO) methods. Journal of Molecular Modeling. 26 (136), pp. 1-23. https://doi.org/10.1007/s00894-020-04374-9
Epistemic insight: a systematic problem and an ecosystemic solution.
Nassaji, M. and Gordon, A.J. 2020. Epistemic insight: a systematic problem and an ecosystemic solution.
Topological analysis of the electron localisation function (ELF) applied to the electronic structure of oxaziridine: the nature of N-O bond
Michalski, M., Gordon, A.J. and Berski, S. 2019. Topological analysis of the electron localisation function (ELF) applied to the electronic structure of oxaziridine: the nature of N-O bond. Stuctural Chemistry. 30, pp. 2181-2189. https://doi.org/10.1007/s11224-019-01407-9
Topological analysis of electron localisation function: Unlocking the nature of B-C chemical bond. Possible existence of multiple bonds B@C and B„C
Mierzwa, G., Gordon, A.J. and Berski, S. 2019. Topological analysis of electron localisation function: Unlocking the nature of B-C chemical bond. Possible existence of multiple bonds B@C and B„C. Polyhedron. 170, pp. 180-187. https://doi.org/https://doi.org/10.1016/j.poly.2019.05.035
The nature of the T=T double bond (T = B, Al, Ga, In) in dialumene and its derivatives: topological study of the electron localization function (ELF)
Michalski, M., Gordon, A.J. and Berski, S. 2019. The nature of the T=T double bond (T = B, Al, Ga, In) in dialumene and its derivatives: topological study of the electron localization function (ELF). Journal of Molecular Modeling. 25, p. 211. https://doi.org/10.1007/s00894-019-4075-7
The electronic structure of molecules with the B F and B Cl bond in light of the topological analysis of electron localization function: Possibility of multiple bonds?
Mierzwa, G., Gordon, A.J. and Berski, S. 2018. The electronic structure of molecules with the B F and B Cl bond in light of the topological analysis of electron localization function: Possibility of multiple bonds? International Journal of Quantum Chemistry. 118, p. e25781. https://doi.org/10.1002/qua.25781
On the nature of the boron–copper interaction. Topological study of the electron localisation function (ELF)
Mierzwa, G., Gordon, A.J. and Berski, S. 2018. On the nature of the boron–copper interaction. Topological study of the electron localisation function (ELF). New Journal of Chemistry . 42, pp. 17096-17114. https://doi.org/10.1039/c8nj03516d
Characterisation of the reaction mechanism between ammonia and formaldehyde from the topological analysis of ELF and catastrophe theory perspective
Cmikiewicz, A., Gordon, A.J. and Berski, S. 2018. Characterisation of the reaction mechanism between ammonia and formaldehyde from the topological analysis of ELF and catastrophe theory perspective. Structural Chemistry. 29, pp. 243-255. https://doi.org/10.1007/s11224-017-1024-x
The electronic structure of the xenon insertion compounds XXe–MX2 (X = F, Cl, Br, I; M = B, Al, Ga)
Makarewicz, E., Gordon, A. and Berski, S. 2016. The electronic structure of the xenon insertion compounds XXe–MX2 (X = F, Cl, Br, I; M = B, Al, Ga). Polyhedron. 117, pp. 97-109. https://doi.org/10.1016/j.poly.2016.05.025
On the nature of interactions in the F2OXe…NCCH3 complex: Is there the Xe(IV)-N bond?
Makarewicz, E,, Lundell, J., Gordon, A.J. and Berski, S. 2016. On the nature of interactions in the F2OXe…NCCH3 complex: Is there the Xe(IV)-N bond? Journal of Computational Chemistry. 37 (20), pp. 1876-1886. https://doi.org/10.1002/jcc.24402
Diversity of the nature of the nitrogen-oxygen bond in inorganic and organic nitrites in the light of topological analysis of electron localisation function (ELF)
Berski, S. and Gordon, A. J. 2016. Diversity of the nature of the nitrogen-oxygen bond in inorganic and organic nitrites in the light of topological analysis of electron localisation function (ELF). in: Applications of Topological Methods in Molecular Chemistry https://link.springer.com/chapter/10.1007/978-3-319-29022-5_19 Springer. pp. 529-551
How many electrons form chemical bonds in the NgBeS (Ng = Ar, Kr, Xe) molecules? Topological study using the electron localisation function (ELF) and electron localisability indicator (ELI-D)
Makarewicz, E., Gordon, A.J. and Berski, S. 2016. How many electrons form chemical bonds in the NgBeS (Ng = Ar, Kr, Xe) molecules? Topological study using the electron localisation function (ELF) and electron localisability indicator (ELI-D). Structural Chemistry. 27, pp. 57-64. https://doi.org/10.1007/s11224-015-0719-0
The DFT study on the reaction between benzaldehyde and 4-amine-4H-1,2,4-triazole and their derivatives as a source of stable hemiaminals and schiff bases. Effect of substitution and solvation on the reaction mechanism
Berski, S., Gordon, A. J. and Ciunik, Z.L. 2015. The DFT study on the reaction between benzaldehyde and 4-amine-4H-1,2,4-triazole and their derivatives as a source of stable hemiaminals and schiff bases. Effect of substitution and solvation on the reaction mechanism. Journal of Molecular Modeling. 21, p. 57. https://doi.org/10.1007/s00894-015-2606-4
Nature of the bonding in the AuNgX (Ng = Ar, Kr, Xe; X = F, Cl, Br, I) molecules. Topological study on electron density and the electron localization function (ELF)
Makarewicz, E., Gordon, A. J. and Berski, S. 2015. Nature of the bonding in the AuNgX (Ng = Ar, Kr, Xe; X = F, Cl, Br, I) molecules. Topological study on electron density and the electron localization function (ELF). Journal of Physical Chemistry A. 119 (11), p. 2401–2412. https://doi.org/10.1021/jp508266k
On the multiple B-O bonding using the topological analysis of electron localisation function (ELF)
Mierzwa, G., Gordon, A. J., Latajka, Z. and Berski, S. 2014. On the multiple B-O bonding using the topological analysis of electron localisation function (ELF). Computational and Theoretical Chemistry. 1053, pp. 130-141. https://doi.org/10.1016/j.comptc.2014.10.003