Automatic identification of non-biting midges (Chironomidae) using object detection and deep learning techniques

Book chapter


Hollister, Jack, Vega, Rodrigo and Azhar, M. A. Hannan Bin 2022. Automatic identification of non-biting midges (Chironomidae) using object detection and deep learning techniques. in: Marsico, Maria D., Sanniti de Baja, Gabriella and Fred, Ana (ed.) Proceedings of the 11 International Conference on Pattern Recognition Applications and Methods SCITEPRESS - Science and Technology Publications.
AuthorsHollister, Jack, Vega, Rodrigo and Azhar, M. A. Hannan Bin
EditorsMarsico, Maria D., Sanniti de Baja, Gabriella and Fred, Ana
Abstract

This paper introduces an automated method for the identification of chironomid larvae mounted on microscope slides in the form of a computer-based identification tool using deep learning techniques. Using images of chironomid head capsules, a series of object detection models were created to classify three genera. These models were then used to show how pre-training preparation could improve the final performance. The model comparisons included two object detection frameworks (Faster-RCNN and SSD frameworks), three balanced image sets (with and without augmentation) and variations of two hyperparameter values (Learning Rate and Intersection Over Union). All models were reported using mean average precision or mAP. Multiple runs of each model configuration were carried out to assess statistical significance of the results. The highest mAP value achieved was 0.751 by Faster-RCNN. Statistical analysis revealed significant differences in mAP values between the two frameworks. When experimenting with hyperparameter values, the combination of learning rates and model architectures showed significant relationships. Although all models produced similar accuracy results (94.4% - 97.8%), the confidence scores varied widely.

KeywordsFreshwater ecology; Computer vison; Object detection; Image classification; Chironomidae; Chironomid; Faster-RCNN; SSD; Raspberry Pi; TensorFlow
Year2022
Book titleProceedings of the 11 International Conference on Pattern Recognition Applications and Methods
PublisherSCITEPRESS - Science and Technology Publications
Output statusPublished
ISBN9789897585494
Publication dates
Online2022
Publication process dates
Deposited28 Feb 2022
Digital Object Identifier (DOI)https://doi.org/10.5220/0010822800003122
Official URLhttps://www.scitepress.org/PublicationsDetail.aspx?ID=SH8ROxJyDvU=&t=1
Additional information

Topics: Bioinformatics and Systems Biology; Deep Learning and Neural Networks; Image and Video Analysis and Understanding; Industry Related Applications

Registration required on publisher's website to view paper.

Permalink -

https://repository.canterbury.ac.uk/item/90831/automatic-identification-of-non-biting-midges-chironomidae-using-object-detection-and-deep-learning-techniques

  • 103
    total views
  • 0
    total downloads
  • 1
    views this month
  • 0
    downloads this month

Export as

Related outputs

Metaverse application forensics: Unravelling the virtual truth
Azhar, H. and Rush-Gadsby, O. Metaverse application forensics: Unravelling the virtual truth. in: Cybersecurity Challenges in the Age of AI, Space Communications and Cyborgs Proceedings of the 15th International Conference on Global Security, Safety and Sustainability, London, October 2023 Cham Springer. pp. 399-414
Transformer-based Models for Enhanced Amur Tiger Re-Identification
Bai, Xufeng, Islam, Tasmina and Bin Azhar, M A Hannan 2024. Transformer-based Models for Enhanced Amur Tiger Re-Identification. in: 2024 IEEE 22nd World Symposium on Applied Machine Intelligence and Informatics (SAMI) IEEE.
Trustworthy Insights: A Novel Multi-Tier Explainable framework for ambient assisted living
Kasirajan, M., Azhar, H. and Turner, S. 2023. Trustworthy Insights: A Novel Multi-Tier Explainable framework for ambient assisted living . https://doi.org/10.1109/TrustCom60117.2023.00357
Assistive telehealth systems for neurorehabilitation
Azhar, H. 2023. Assistive telehealth systems for neurorehabilitation.
Optimal locations and computational frameworks of FSR and IMU sensors for measuring gait abnormalities
Manna, S., Azhar, H. and Greace, A. 2023. Optimal locations and computational frameworks of FSR and IMU sensors for measuring gait abnormalities. Heliyon. 9 (4), p. e15210. https://doi.org/10.1016/j.heliyon.2023.e15210
Spying on kids’ smart devices: Beware of security vulnerabilities!
Azhar, H., Smith, D. and Cain, A. 2023. Spying on kids’ smart devices: Beware of security vulnerabilities! in: Jahankhani, H. (ed.) Cybersecurity in the Age of Smart Societies Proceedings of the 14th International Conference on Global Security, Safety and Sustainability, London, September 2022 Springer. pp. 123-140
Characterising Mitochondrial Capture in an Iberian Shrew.
Kunerth, H., Tapisso, J., Valente, R., Mathias, M., Alves, P., Searle, J., Vega, R. and Paupério, J. 2022. Characterising Mitochondrial Capture in an Iberian Shrew. Genes. 13 (12), p. 2228. https://doi.org/10.3390/genes13122228
Cyber threats and exploits during the pandemic
Lo, J. and Azhar, H. Cyber threats and exploits during the pandemic. ASEAN Tech and Security, Singapore .
Z is for Zoombombing
Azhar, H. 2022. Z is for Zoombombing. Medium.
Progressive web app for real-time doctor-patient communication and searchable health conditions
Hannan Bin Azhar, M A and Mohan, Joseph Thomas 2022. Progressive web app for real-time doctor-patient communication and searchable health conditions. 2022 E-Health and Bioengineering Conference (EHB). https://doi.org/10.1109/EHB55594.2022.9991288
Forensic investigations of Google Meet and Microsoft Teams – two popular conferencing tools in the Pandemic
Azhar, H., Timms, J. and Tilley, B. 2022. Forensic investigations of Google Meet and Microsoft Teams – two popular conferencing tools in the Pandemic. in: Digital Forensics and Cyber Crime Springer Nature. pp. 20-34
The mtDNA diversity of captive ruffed lemurs (Varecia spp.): Implications for conservation
Vega, R., Hopper, Jane, Kitchener, Andrew C., Catinaud, Jerome, Roullet, Delphine, Robsomanitrandrasana, Eric, Hollister, Jack D., Roos, Christian and King, Tony 2022. The mtDNA diversity of captive ruffed lemurs (Varecia spp.): Implications for conservation. Oryx. https://doi.org/10.1017/S0030605322000643
Tele-tDCS: A Novel Tele-neuromodulation Framework using Internet of Medical Things
Herring, Samuel, Azhar, M. A. Hannan Bin and Sakel, Mohamed 2022. Tele-tDCS: A Novel Tele-neuromodulation Framework using Internet of Medical Things. in: Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies - BIODEVICES Setúbal, Portugal SCITEPRESS - Science and Technology Publications. pp. 84-93
A smart and secure IoMT tele-neurorehabilitation framework for post-stroke patients
Manna, S., Azhar, H. and Sakel, M. 2022. A smart and secure IoMT tele-neurorehabilitation framework for post-stroke patients. in: Bhaumik, S., Chattopadhyay, S., Chattopadhyay, T. and Bhattacharya, S. (ed.) Proceedings of International Conference on Industrial Instrumentation and Control ICI2C 2021 Singapore Springer. pp. 11-20
An inclusive student-led online class test during the pandemic
Manna, S. and Azhar, H. 2021. An inclusive student-led online class test during the pandemic . Assessment and Feedback Symposium 2021.
A forensic tool to acquire radio signals using software defined radio
Azhar, H. and Abadia, G. 2021. A forensic tool to acquire radio signals using software defined radio. in: Security and Privacy in Communication Networks : 17th EAI International Conference, SecureComm 2021, Virtual Event, September 6-9, 2021, Proceedings, Part I Springer.
Post-pandemic digital education: Investigating smart workspaces within the higher education sector
Azhar, M A Hannan Bin, Lepore, Emily Louise and Islam, T. 2021. Post-pandemic digital education: Investigating smart workspaces within the higher education sector. Proceedings of the BCS 34th British HCI Conference 2021. 34, pp. 284-288. https://doi.org/10.14236/ewic/hci2021.30
A study of user experiences and network analysis on anonymity and traceability of bitcoin transactions
Azhar, M.A.H.B and Whitehead, R.V. 2021. A study of user experiences and network analysis on anonymity and traceability of bitcoin transactions. EAI Endorsed Transactions on Security and Safety. https://doi.org/10.4108/eai.30-4-2021.169577
BCI controlled robotic arm as assistance to the rehabilitation of neurologically disabled patients
Azhar, H. 2021. BCI controlled robotic arm as assistance to the rehabilitation of neurologically disabled patients.
Diversity of Chironomidae (Diptera) breeding in the Great Stour, Kent: baseline results from the Westgate Parks non-biting midge project
Vega, R., Brooks, Stephen J., Hockaday, Wendy, Lee, Scarlett and Vane-Wright, Richard I. 2021. Diversity of Chironomidae (Diptera) breeding in the Great Stour, Kent: baseline results from the Westgate Parks non-biting midge project. Journal of Natural History. 55 (11-12), pp. 665-682. https://doi.org/10.1080/00222933.2021.1919776
Population genetics and geometric morphometrics of freshwater snail Segmentina nitida reveal cryptic sympatric species of conservation value in Europe
Harvey, C. D., Hobbs, C., Horsburgh, G. J., Dawson, D.A., Vega, R. and Rahman, F. 2021. Population genetics and geometric morphometrics of freshwater snail Segmentina nitida reveal cryptic sympatric species of conservation value in Europe. Conservation Genetics.
Automatic non-biting midge (Chironomidae) identification through the application of object detection and deep learning techniques
Hollister, J. 2020. Automatic non-biting midge (Chironomidae) identification through the application of object detection and deep learning techniques. Masters Thesis Canterbury Christ Church University School of Psychology and Life Sciences
Conservation genetics of regionally extinct peregrine falcons (Falco peregrinus) and unassisted recovery without genetic bottleneck in southern England
Weaving, A., Jackson, H. A, Nicholls, M. K., Franklin, J. and Vega, R. 2020. Conservation genetics of regionally extinct peregrine falcons (Falco peregrinus) and unassisted recovery without genetic bottleneck in southern England. Conservation Genetics. https://doi.org/10.1007/s10592-020-01324-z
Forensic investigations of popular ephemeral messaging applications on Android and iOS platforms
Azhar, H., Cox, R. and Chamberlain, A. 2020. Forensic investigations of popular ephemeral messaging applications on Android and iOS platforms. International Journal on Advances in Security. 13 (1 & 2), pp. 41 - 53.
Phylogeographic structure of the pygmy shrew: revisiting the roles of southern and northern refugia in Europe
Vega, Rodrigo, McDevitt, Allan D, Stojak, Joanna, Mishta, Alina, Wójcik, Jan M, Kryštufek, Boris and Searle, Jeremy B 2020. Phylogeographic structure of the pygmy shrew: revisiting the roles of southern and northern refugia in Europe. Biological Journal of the Linnean Society. 129 (4), pp. 901-917. https://doi.org/10.1093/biolinnean/blz209
Comparisons of forensic tools to recover ephemeral data from iOS apps used for cyberbullying
Chamberlain, A. and Azhar, H. 2019. Comparisons of forensic tools to recover ephemeral data from iOS apps used for cyberbullying. in: CYBER 2019, The Fourth International Conference on Cyber-Technologies and Cyber-Systems IARIA. pp. 88-93
Recovery of forensic artefacts from a smart home IoT ecosystem
Azhar, H. and Bate, S. 2019. Recovery of forensic artefacts from a smart home IoT ecosystem. in: CYBER 2019, The Fourth International Conference on Cyber-Technologies and Cyber-Systems IARIA. pp. 94-99
BCI controlled robotic arm as assistance to the rehabilitation of neurologically disabled patients
Casey, A., Azhar, H., Grzes, M. and Sakel, M. 2019. BCI controlled robotic arm as assistance to the rehabilitation of neurologically disabled patients. Disability and Rehabilitation: Assistive Technology. 16 (5), pp. 525-537. https://doi.org/10.1080/17483107.2019.1683239
Effects of students’ preferences in use of lighting and temperature on productivity in a university setting
Azhar, H., Islam, T. and Alfieri, M. 2019. Effects of students’ preferences in use of lighting and temperature on productivity in a university setting. in: Zheng, P., Callaghan, V., Crawford, D., Kymalainen, T. and Reyes-Munoz, A. (ed.) EAI International Conference on Technology, Innovation, Entrepreneurship and Education Springer.
Use of wearable technology to measure emotional responses amongst tennis players
Azhar, H., Nelson, T. and Casey, A. 2019. Use of wearable technology to measure emotional responses amongst tennis players. in: Zheng, P., Callaghan, V., Crawford, D., Kymalainen, T. and Reyes-Munoz, A. (ed.) EAI International Conference on Technology, Innovation, Entrepreneurship and Education Springer.
Drone forensic analysis using open source tools
Azhar, H., Barton, T. and Islam, T. 2018. Drone forensic analysis using open source tools. Journal of Digital Forensics, Security and Law. 13 (1), pp. 7-30.
Synchronous diversification of Sulawesi’s iconic artiodactyls driven by recent geological events
Frantz, L., Rudzinski, A., Mansyursyah Surya Nugraha, A., Evin, A., Burton, J., Hulme-Beaman, A., Linderholm, A., Barnett, R., Vega, R., Irving-Pease, E., Haile, J., Allen, R., Leus, K., Shephard, J., Hillyer, M., Gillemot, S., van den Hurk, J., Ogle, S., Atofanei, C., Thomas, M., Johansson, F., Haris Mustari, A., Williams, J., Mohamad, K., Siska Damayanti, C., Djuwita Wiryadi, I., Obbles, D., Mona, S., Day, H., Yasin, M., Meker, S., McGuire, J., Evans, B., von Rintelen, T., Hoult, S., Searle, J., Kitchener, A., Macdonald, A., Shaw, D., Hall, R., Galbusera, P. and Larson, G. 2018. Synchronous diversification of Sulawesi’s iconic artiodactyls driven by recent geological events. Proceedings of the Royal Society B: Biological Sciences. https://doi.org/10.1098/rspb.2017.2566
A cost-effective BCI assisted technology framework for neurorehabilitation
Azhar, H., Casey, A. and Sakel, M. 2018. A cost-effective BCI assisted technology framework for neurorehabilitation.
An investigation on forensic opportunities to recover evidential data from mobile phones and personal computers
Naughton, P. and Azhar, H. 2017. An investigation on forensic opportunities to recover evidential data from mobile phones and personal computers.
BCI controlled robotic arm as assistance to the rehabilitation of neurologically disabled patients
Azhar, H., Barton, T., Casey, A. and Sakel, M. 2017. BCI controlled robotic arm as assistance to the rehabilitation of neurologically disabled patients. Research and Knowledge Exchange Conference 2017.
Open source forensics for a multi-platform drone system
Barton, T. and Azhar, H. 2018. Open source forensics for a multi-platform drone system. in: Matousek, P. and Schmiedecker, M. (ed.) 9th EAI International Conference on Digital Forensics & Cyber Crime Springer. pp. 83-96
Evaluation of the MPS Predictive Policing Trial (redacted)
Bryant, R., Azhar, H., Blackburn, B. and Falade, M. 2015. Evaluation of the MPS Predictive Policing Trial (redacted).
Taenia solium cysticercosis of humans and pigs: a review of our contributions and perspectives in the research of its complexities
Sciutto, E., Fragoso, G., Fleury, A., Vega, R., Yañez, O., Carrillo Mezo, R., Piña, J., De Aluja, S. and Larralde, C. 2003. Taenia solium cysticercosis of humans and pigs: a review of our contributions and perspectives in the research of its complexities. in: Pandalai, S. (ed.) Recent Research Developments in Infection & Immunity Kerala, India Transworld Research Network.
Oryzomys couesi en el sureste de México: estimaciones genéticas y filogeográficas
Vázquez-Domínguez, E., Mejía-Puente, A. and Vega, R. 2009. Oryzomys couesi en el sureste de México: estimaciones genéticas y filogeográficas. in: Cervantes, F., Vargas-Cuenca, J. and Hortelano-Moncada, Y. (ed.) 60 años de la Colección Nacional de Mamíferos del Instituto de Biología, UNAM. Aportaciones al conocimiento y conservación de los mamíferos mexicanos Mexico Instituto de Biología, UNAM. pp. 205-219
Population genetic structure of Taenia solium from Madagascar and Mexico: implications for clinical profile diversity and immunological technology
Vega, R., Piñero, D., Ramanankandrasana, B., Dumas, M., Bouteille, B., Fleury, A., Sciutto, E., Larralde, C. and Fragoso, G. 2003. Population genetic structure of Taenia solium from Madagascar and Mexico: implications for clinical profile diversity and immunological technology. International Journal for Parasitology. 33 (13), pp. 1479-1485. https://doi.org/10.1016/S0020-7519(03)00206-6
Unexpected high levels of genetic variability and the population structure of an island endemic rodent (Oryzomys couesi cozumelae)
Vega, R., Vázquez-Domínguez, E., Mejía-Puente, A. and Cuarón, A. 2007. Unexpected high levels of genetic variability and the population structure of an island endemic rodent (Oryzomys couesi cozumelae). Biological Conservation. 137 (2), pp. 210-222. https://doi.org/10.1016/j.biocon.2007.02.007
Genetic diversity of Taenia solium cysticerci from naturally infected pigs of central Mexico
Bobes, R., Fragoso, G., Reyes-Montes, M., Duarte-Escalante, E., Vega, R., de Aluja, A., Zúñiga, G., Morales, J., Larralde, C. and Sciutto, E. 2010. Genetic diversity of Taenia solium cysticerci from naturally infected pigs of central Mexico. Veterinary Parasitology. 168 (1-2), pp. 130-135. https://doi.org/10.1016/j.vetpar.2009.11.001
Properties of a hybrid zone between highly distinct chromosomal races of the house mouse (Mus musculus domesticus) in northern Italy, and comparisons with other hybrid zones
Hauffe, H., Giménez, M., Vega, R., White, T. and Searle, J. 2011. Properties of a hybrid zone between highly distinct chromosomal races of the house mouse (Mus musculus domesticus) in northern Italy, and comparisons with other hybrid zones. Cytogenetic and Genome Research. 134 (3), pp. 191-199. https://doi.org/10.1159/000327717
How Varroa Parasitism affects the immunological and nutritional status of the honey bee, Apis mellifera
Aronstein, K., Saldivar, E., Vega, R., Westmiller, S. and Douglas, A. 2012. How Varroa Parasitism affects the immunological and nutritional status of the honey bee, Apis mellifera. Insects. 3 (3), pp. 601-615.
Genetic and morphological variation in a Mediterranean glacial refugium: evidence from Italian pygmy shrews, Sorex minutus (Mammalia: Soricomorpha)
Vega, R., Amori, G., Aloise, G., Cellini, S., Loy, A. and Searle, J. 2010. Genetic and morphological variation in a Mediterranean glacial refugium: evidence from Italian pygmy shrews, Sorex minutus (Mammalia: Soricomorpha). Biological Journal of the Linnean Society. 100 (4), pp. 774-787. https://doi.org/10.1111/j.1095-8312.2010.01454.x
Forensic analysis of popular UAV systems
Barton, T. and Azhar, H. 2017. Forensic analysis of popular UAV systems. Emerging Security Technologies (EST), 2017 Seventh International Conference on. https://doi.org/10.1109/EST.2017.8090405
A wearable brain-computer interface controlled robot
Azhar, H., Badicioiu, A. and Barton, T. 2016. A wearable brain-computer interface controlled robot.
Forensic analysis of the recovery of Wickr’s ephemeral data on Android platforms
Barton, T. and Azhar, H. 2016. Forensic analysis of the recovery of Wickr’s ephemeral data on Android platforms. in: Klemas, T. and Falk, R. (ed.) CYBER 2016 : The First International Conference on Cyber-Technologies and Cyber-Systems IARIA. pp. 35-40
Forensic analysis of secure ephemeral messaging applications on Android platforms
Azhar, H. and Barton, T. 2017. Forensic analysis of secure ephemeral messaging applications on Android platforms. in: Global Security, Safety and Sustainability - The Security Challenges of the Connected World: 11th International Conference, ICGS3 2017, London, UK, January 18-20, 2017, Proceedings Springer.
Population genomics applications for conservation: the case of the tropical dry forest dweller Peromyscus melanophrys
Vega, R., Vázquez-Domínguez, E., White, T., Valenzuela-Galván, D. and Searle, J. 2016. Population genomics applications for conservation: the case of the tropical dry forest dweller Peromyscus melanophrys. Conservation Genetics. https://doi.org/10.1007/s10592-016-0907-5
Ecogeographical patterns of morphological variation in pygmy shrews Sorex minutus (Soricomorpha: Soricinae) within a phylogeographic and continental-and-island framework
Vega, R., McDevitt, A., Krystufek, B. and Searle, J. 2016. Ecogeographical patterns of morphological variation in pygmy shrews Sorex minutus (Soricomorpha: Soricinae) within a phylogeographic and continental-and-island framework. Biological Journal of the Linnean Society. https://doi.org/10.1111/bij.12858
Usability and performance measure of a consumer-grade brain computer interface system for environmental control by neurological patients
Deravi, F., Ang, C., Azhar, H., Al-Wabil, A., Philips, M. and Sakel, M. 2015. Usability and performance measure of a consumer-grade brain computer interface system for environmental control by neurological patients. International Journal of Engineering and Technology Innovation (IJETI). 5 (3), pp. 165-177.
Criticality dispersion in swarms to optimize n-tuples
Azhar, H., Deravi, F. and Dimond, K. 2008. Criticality dispersion in swarms to optimize n-tuples. in: GECCO '08: Proceedings of the 10th Annual Conference on Genetic and Evolutionary Computation New York Association for Computing Machinery. pp. 1-8
Particle swarm intelligence to optimize the learning of n-tuples
Azhar, H., Deravi, F. and Dimond, K. 2008. Particle swarm intelligence to optimize the learning of n-tuples. Journal of Intelligent Systems. 17 (S), pp. 169-196. https://doi.org/10.1515/JISYS.2008.17.S1.169
Automatic identification of wildlife using local binary patterns
Azhar, H., Hoque, S. and Deravi, F. 2012. Automatic identification of wildlife using local binary patterns. in: IET Conference on Image Processing (IPR 2012) Institute of Engineering and Technology. pp. 5-11
Zoometrics - biometric identification of wildlife using natural body marks
Hoque, S., Azhar, H. and Deravi, F. 2011. Zoometrics - biometric identification of wildlife using natural body marks. International Journal of Bio-Science and Bio-Technology. 3 (3), pp. 45-53.
Northern glacial refugia for the pygmy shrew (Sorex minutus) in Europe revealed by phylogeographic analyses and species distribution modelling.
Vega, R., Fløjgaard, C., Lira-Noriega, A., Nakazawa, Y., Svenning, J. and Searle, J. 2010. Northern glacial refugia for the pygmy shrew (Sorex minutus) in Europe revealed by phylogeographic analyses and species distribution modelling. Ecography. 33 (2), pp. 260-271. https://doi.org/10.1111/j.1600-0587.2010.06287.x
Forensic acquisitions of WhatsApp data on popular mobile platforms
Shortall, A. and Azhar, H. 2015. Forensic acquisitions of WhatsApp data on popular mobile platforms. in: Proceedings of the Sixth International Conference on Emerging Security Technologies IEEE. pp. 13-17
Multiple refugia and barriers explain the phylogeography of the Valais shrew, Sorex antinorii (Mammalia: Soricomorpha)
Yannic, G., Pellissier, L., Dubey, S., Vega, R., Basset, P., Mazzotti, S., Hauffe, H., Searle, J. and Hausser, J. 2012. Multiple refugia and barriers explain the phylogeography of the Valais shrew, Sorex antinorii (Mammalia: Soricomorpha). Biological Journal of the Linnean Society. 105 (4), pp. 864-880. https://doi.org/10.1111/j.1095-8312.2011.01824.x
Colonisation of Ireland: revisiting ‘the pygmy shrew syndrome’ using mitochondrial, Y chromosomal and microsatellite markers
McDevitt, A., Vega, R., Rambau, R., Yannic, G., Herman, J., Hayden, T. and Searle, J. 2011. Colonisation of Ireland: revisiting ‘the pygmy shrew syndrome’ using mitochondrial, Y chromosomal and microsatellite markers. Heredity. 107 (6), pp. 548-557. https://doi.org/10.1038/hdy.2011.41